IQ-TREE multicore version 2.0.3 for Linux 64-bit built Apr 26 2020
Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor,
Heiko Schmidt, Dominik Schrempf, Michael Woodhams.

Host:    cn51 (AVX2, FMA3, 125 GB RAM)
Command: /home/smg655/.conda/envs/iqtree/bin/iqtree -t All_Species_m2_AllMapped_edited.nwk -s All_Species_m2_intron.nexus --scf 100 --prefix concord_intron_ref -T 2
Seed:    790537 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Mon May  3 11:33:42 2021
Kernel:  AVX+FMA - 2 threads (2 CPU cores detected)

Reading alignment file All_Species_m2_intron.nexus ... Nexus format detected
Alignment has 26 sequences with 533334 columns, 173808 distinct patterns
526431 parsimony-informative, 0 singleton sites, 6903 constant sites
        Gap/Ambiguity  Composition  p-value
   1  ActMar    1.43%    failed      0.00%
   2  AldGig    1.66%    failed      0.00%
   3  ApaSpi    3.51%    failed      0.00%
   4  BatTri   48.27%    failed      0.00%
   5  CarIns   11.54%    failed      0.00%
   6  CheAbi    6.25%    failed      0.01%
   7  CheMyd    0.85%    failed      0.00%
   8  CheSer    3.36%    failed      0.00%
   9  ChrPic    0.37%    failed      0.00%
  10  CuoAmb    2.26%    failed      0.00%
  11  CuoMcc    0.83%    failed      0.00%
  12  DerCor    1.49%    failed      0.00%
  13  DerMaw    2.43%    failed      0.12%
  14  EmyOrb   40.93%    failed      0.00%
  15  EmySub    2.19%    failed      0.00%
  16  GopAga    0.91%    failed      0.01%
  17  MalTer    6.95%    failed      0.00%
  18  MauRee    0.66%    failed      0.00%
  19  MesTub    3.67%    failed      0.00%
  20  PelCas    5.73%    failed      0.00%
  21  PelSin    3.91%    failed      0.00%
  22  PlaMeg    0.86%    failed      0.00%
  23  PodExp   13.80%    failed      0.00%
  24  SteCar    3.26%    passed     96.14%
  25  TerCar    1.82%    failed      0.00%
  26  TraScr    0.77%    failed      0.00%
****  TOTAL     6.53%  25 sequences failed composition chi2 test (p-value<5%; df=3)
Reading tree All_Species_m2_AllMapped_edited.nwk ...
un-rooted tree with 26 taxa and 49 branches
Computing site concordance factor...
3.538 sec
Tree with concordance factors written to concord_intron_ref.cf.tree
Annotated tree (best viewed in FigTree) written to concord_intron_ref.cf.tree.nex
Tree with branch IDs written to concord_intron_ref.cf.branch
Concordance factors per branch printed to concord_intron_ref.cf.stat
Date and Time: Mon May  3 11:33:51 2021
